专论与研究

稻米贮藏蛋白家族的生物信息学分析

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  • 河南农业大学农学院/河南粮食作物协同创新中心/河南省水稻生物学重点实验室,郑州 450002

网络出版日期: 2018-01-20

Bioinformatics Analysis of Rice Storage Proteins Families

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Online published: 2018-01-20

摘要

贮藏蛋白是稻米中的第二大主要成分,是影响稻米食味品质和营养价值的重要因素。对水稻中谷蛋白、醇溶蛋白、清蛋白、球蛋白等4大类贮藏蛋白在基因组中的分布、基因结构、表达模式以及各个蛋白家族内不同拷贝的进化关系进行研究。结果表明,谷蛋白和醇溶蛋白在基因组上的拷贝数较多,分别有15个和28个基因拷贝检测到表达。谷蛋白家族可分为3个亚家族,醇溶蛋白分为2个亚家族,并根据不同拷贝的亲缘关系对未命名的基因进行命名。清蛋白和球蛋白拷贝数较少,清蛋白有5个拷贝,其中SSA1、SSA5表达量较高,其他拷贝表达相对较低,而球蛋白的3个拷贝表达量都极低。本文为水稻贮藏蛋白以及稻米品质的研究提供了理论参考。

本文引用格式

孙红正,郭凯,宋宁垣,赵全志* . 稻米贮藏蛋白家族的生物信息学分析[J]. 中国稻米, 2018 , 24(1) : 52 -57 . DOI: 10.3969/j.issn.1006-8082.2018.01.012

Abstract

Storage protein is the second most important component of rice grain, which is one of the important evaluation factor affecting the tasting and nutrition quality. By investigation of the genome location, gene structure, expression mode and phylogenetic relationship of rice glutelin, prolamin, albumin and globulin, the results showed that glutelin and prolamin genes had multiple copies in the rice genome, which had 15 and 28 copies, respectively. The glutelin family could be classified into three subfamilies, and the prolamin family could be divided into two subfamilies. According to the relationship of gene copies, unnamed copies were assigned proper nomenclature. The albumin and globulin families had fewer copies. The albumin family had five copies. Of the five copies, the SSA1 and SSA5 copies had relatively higher expression level, and the other three copies were expressed at low level. The expression of three copies of the globulin family were extremely low. This study provide a theoretical guide for rice seed storage protein research.

参考文献

[1] 胡忠孝. 中国水稻生产形势分析[J]. 杂交水稻,2009,24(6):1-7. [2] 陈能,罗玉坤,谢黎虹,等. 我国水稻品种的蛋白质含量及与米质的相关性研究[J]. 作物学报,2006,32(8):1 193-1 196. [3] 张欣,施利利,丁得亮,等. 稻米蛋白质相关性状与RVA特征谱及食味品质的关系[J]. 食品科技,2014,39(10):188-191. [4] 张启莉,谢黎虹,李仕贵,等. 稻米蛋白质与蒸煮食味品质的关系研究进展[J]. 中国稻米,2012,18(4):1-6. [5] 吴洪恺,刘世家,江玲,等. 稻米蛋白质组分及总蛋白质含量与淀粉RVA谱特征值的关系[J]. 中国水稻科学,2009,23(4):421-426. [6] 王继馨,张云江,程爱华,等. 水稻蛋白亚基含量对米饭食味的影响[J]. 中国农学通报,2008,24(1):89-92. [7] Kim H J, Lee J Y, Yoon U H, et al. Effects of reduced prolamin on seed storage protein composition and the nutritional quality of rice[J]. Int J Mol Sci, 2013, 14(8): 17 073-17 084. [8] 王忠,顾蕴洁,陈刚,等. 稻米的品质和影响因素[J]. 分子植物育种,2003,1(2):231-241. [9] 孙平. 蛋白质含量多会降低稻米食味吗?——试析日本产销界关于稻米食味和应否追肥问题的争议[J]. 中国稻米,1998,4(5):31-33. [10] Kawakatsu T, Yamamoto M P, Hirose S et al. Characterization of a new rice glutelin gene GluD-1 expressed in the starchy endosperm[J]. J Exp Bot, 2008, 59(15): 4 233-4 245. [11] Qu L Q, Xing Y P, Liu W X et al. Expression pattern and activity of six glutelin gene promoters in transgenic rice[J]. J Exp Bot, 2008, 59(9): 2 417-2 424. [12] Takaiwa F, K Oono. Genomic DNA sequences of two new genes for new storage protein glutelin in rice[J]. Jpn J Genet, 1991, 66(2): 161-171. [13] Duan M, Sun S S. Profiling the expression of genes controlling rice grain quality[J]. Plant Mol Biol, 2005, 59(1): 165-178. [14] Lee H J, Jo Y M, Lee J Y, et al. Lack of globulin synthesis during seed development alters accumulation of seed storage proteins in rice[J]. Int J Mol Sci, 2015, 16(7): 1 4717-1 436. [15] Yuan Q, Ouyang S, Liu J et al., The TIGR rice genome annotation resource: annotating the rice genome and creating resources for plant biologists[J]. Nucleic Acids Res, 2003, 31(1): 229-233. [16] Tamura K, Stecher G, Peterson D, et al. MEGA6: molecular evolutionary genetics analysis version 6.0[J]. Mol Biol Evol, 2013, 30(12): 2 725-2 729. [17] Mawal Y R, Mawal M R, Ranjekar P K. Biochemical and immunological characterization of rice albumin[J]. Biosci Rep, 1987, 7(1): 1-9. [18] 牛洪斌,覃怀德,王益华,等. 水稻谷蛋白的一个新基因克隆及表达分析[J]. 作物学报,2007,33(3):349-355. [19] Saito Y, Shigemitsu T, Yamasaki R, et al. Formation mechanism of the internal structure of type I protein bodies in rice endosperm:relationship between the localization of prolamin species and the expression of individual genes[J]. Plant J, 2012, 70(6): 1 043-1 055. [20] He Y, Ning T, Xie T, et al. Large-scale production of functional human serum albumin from transgenic rice seeds[J]. Proc Natl Acad Sci U S A, 2011, 108(47): 19 078-19 083. [21] Ning T, Xie T, Qiu Q, et al. Oral administration of recombinant human granulocyte-macrophage colony stimulating factor expressed in rice endosperm can increase leukocytes in mice[J]. Biotechnol Lett, 2008, 30(9): 1 679-1 686. [22] 刘奕,程方民. 稻米中蛋白质和脂类与稻米品质的关系综述[J]. 中国粮油学报, 2006,21(4):6-10. [23] Kawakatsu T, Hirose S, Yasuda H, et al. Reducing rice seed storage protein accumulation leads to changes in nutrient quality and storage organelle formation[J]. Plant Physiol, 2010, 154(4): 1 842-1 854.
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